Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
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Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia. / Jahari, Puteri Nur Syahzanani; Mohd Azman, Shahfiz; Munian, Kaviarasu; Ahmad Ruzman, Nor Hazwani; Shamsir, Mohd Shahir; Richter, Stine R.; Gilbert, M. Thomas P.; Mohd Salleh, Faezah.
In: Mitochondrial DNA Part B: Resources, Vol. 5, No. 3, 2020, p. 3022-3024.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Molecular identification and phylogenetic analysis of a Callosciurus notatus complete mitogenome from Peninsular Malaysia
AU - Jahari, Puteri Nur Syahzanani
AU - Mohd Azman, Shahfiz
AU - Munian, Kaviarasu
AU - Ahmad Ruzman, Nor Hazwani
AU - Shamsir, Mohd Shahir
AU - Richter, Stine R.
AU - Gilbert, M. Thomas P.
AU - Mohd Salleh, Faezah
PY - 2020
Y1 - 2020
N2 - The mitogenome of a plantain squirrel,Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously publishedC. notatusmitogenome from Peninsular Malaysia. However, it also diverged by nearly 8% (92.24% match) from a second previously published mitogenome for the same species, sampled in East Kalimantan, Indonesia. This suggests a difference in landscape features between both localities might affect its genetic connectivity.
AB - The mitogenome of a plantain squirrel,Callosciurus notatus, collected from Bukit Tarek Forest Reserve (Extension), Selangor, Malaysia was sequenced using BGISEQ-500RS technology. The 16,582 bp mitogenome consists of 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. A phylogenetic and BLASTn analysis against other available datasets showed that the mitogenome matched with 99.49% similarity to a previously publishedC. notatusmitogenome from Peninsular Malaysia. However, it also diverged by nearly 8% (92.24% match) from a second previously published mitogenome for the same species, sampled in East Kalimantan, Indonesia. This suggests a difference in landscape features between both localities might affect its genetic connectivity.
KW - Callosciurus notatus
KW - mitogenome
KW - phylogenetic analysis
KW - MAMMALS
U2 - 10.1080/23802359.2020.1797583
DO - 10.1080/23802359.2020.1797583
M3 - Journal article
C2 - 33458034
VL - 5
SP - 3022
EP - 3024
JO - Mitochondrial DNA Part B: Resources
JF - Mitochondrial DNA Part B: Resources
SN - 2380-2359
IS - 3
ER -
ID: 248893342