Bent Petersen
Senior Researcher
Section for Hologenomics
Øster Farimagsgade 5
1353 København K
- 2024
- E-pub ahead of print
Complexity of avian evolution revealed by family-level genomes
Stiller, J., Feng, S., Chowdhury, A-A., Rivas-González, I., Duchêne, D. A., Fang, Q., Deng, Y., Kozlov, A., Stamatakis, A., Claramunt, S., Nguyen, J. M. T., Ho, S. Y. W., Faircloth, B. C., Haag, J., Houde, P., Cracraft, J., Balaban, M., Mai, U., Chen, G., Gao, R. & 32 others, , 1 Apr 2024, (E-pub ahead of print) In: Nature. 30 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete genome sequence of plant growth-promoting Bacillus stratosphericus AIMST-CREST02 isolated from bulk soil of a paddy field
Sivaprakasam, S., Khan, N. A. M. A., Fan, T. Y., Kumarasan, Y., Sicheritz-Pontén, Thomas, Petersen, Bent, Hata, E. M., Vadamalai, G., Parimannan, Sivachandran & Rajandas, Heera, 2024, In: Microbiology resource announcements. 13, 4, 3 p., e0113723.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros
Sánchez-Barreiro, F., Westbury, Binia De Cahsan, Westbury, Michael Vincent, Sun, Xin, Margaryan, Ashot, Fontsere, Claudia, Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz-Pontén, Thomas, Petersen, Bent, Dalén, L., KU, thw266, Marquès-Bonet, T., Gilbert, M Thomas P & Moodley, Y., 2023, In: Molecular Biology and Evolution. 40, 9, 19 p., msad180.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Large haploblocks underlie rapid adaptation in the invasive weed Ambrosia artemisiifolia
Battlay, P., Wilson, J., Bieker, V. C., Lee, C., Prapas, D., Petersen, Bent, Craig, S., van Boheemen, L., Scalone, R., de Silva, N. P., Sharma, A., Konstantinović, B., Nurkowski, K. A., Rieseberg, L. H., Connallon, T., Martin, M. D. & Hodgins, K. A., 2023, In: Nature Communications. 14, 15 p., 1717.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phenotypic Characterization and Comparative Genomic Analysis of Novel Salmonella Bacteriophages Isolated from a Tropical Rainforest
Mutusamy, P., Singh, K. K. B., Yin, L. S., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2023, In: International Journal of Molecular Sciences. 24, 4, 15 p., 3678.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the island thrush elucidates one of earth's great archipelagic radiations
Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2023, In: Evolution Letters. 7, 1, p. 24-36 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The formation of the Indo-Pacific montane avifauna
Reeve, A. H., Kennedy, J. D., Pujolar, J. M., Petersen, Bent, Blom, M. P. K., Alström, P., Haryoko, T., Ericson, P. G. P., Irestedt, M., Nylander, J. A. A. & Jønsson, Knud Andreas, 2023, In: Nature Communications. 14, 15 p., 8215.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning
Høie, M. H., Kiehl, E. N., Petersen, Bent, Nielsen, M., Winther, Ole, Nielsen, H., Hallgren, J. & Marcatili, P., 2022, In: Nucleic Acids Research. 50, W1, p. W510-W515 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach
Yukgehnaish, K., Rajandas, Heera, Parimannan, Sivachandran, Manickam, R., Marimuthu, K., Petersen, Bent, Clokie, M. R. J., Millard, A. & Sicheritz-Pontén, Thomas, 2022, In: Viruses. 14, 2, 16 p., 342.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Population genomics of the island thrush elucidates one of earth’s great archipelagic radiations
Hart Reeve, A., Gower, Graham, Pujolar, J. M., Smith, B. T., Petersen, Bent, Olsson, U., Haryoko, T., Koane, B., Maiah, G., Blom, M. P. K., Ericson, P. G. P., Irestedt, M., Racimo, Fernando & Jønsson, Knud Andreas, 2022, bioRxiv, 46 p.Research output: Working paper › Preprint › Research
- Published
The genomic basis of the plant island syndrome in Darwin’s giant daisies
Cerca, J., Petersen, B., Lazaro-Guevara, J. M., Rivera-Colón, A., Birkeland, S., Vizueta, J., Li, S., Li, Q., Loureiro, J., Kosawang, C., Díaz, P. J., Rivas-Torres, G., Fernández-Mazuecos, M., Vargas, P., McCauley, R. A., Petersen, G., Santos-Bay, L., Wales, N., Catchen, J. M., Machado, D. & 9 others, , 2022, In: Nature Communications. 13, 13 p., 3729.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The population genomic legacy of the second plague pandemic
Gopalakrishnan, S., Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, A., Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, X., Moltke, I., Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, S. & 40 others, , 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Uncovering the genomic basis of an extraordinary plant invasion
Bieker, V. C., Battlay, P., Petersen, B., Sun, X., Wilson, J., Brealey, J. C., Bretagnolle, F., Nurkowski, K., Lee, C., Barreiro, F. S., Owens, G. L., Lee, J. Y., Kellner, F. L., van Boheeman, L., Gopalakrishnan, S., Gaudeul, M., Mueller-Schaerer, H., Lommen, S., Karrer, G., Chauvel, B. & 8 others, , 2022, In: Science Advances. 8, 34, 18 p., eabo5115.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
- Published
An improved direct metamobilome approach increases the detection of larger-sized circular elements across kingdoms
Alanin, K. W. S., Jørgensen, T. S., Browne, Patrick Denis, Petersen, Bent, Riber, Leise, Kot, Witold & Hansen, Lars Hestbjerg, 2021, In: Plasmid. 115, 11 p., 102576.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Complete Genome Sequence of Salmonella enterica Bacteriophage PRF-SP1
Mutusamy, P., Jothi, S. J., Lee, S. Y., Petersen, Bent, Sicheritz-Pontén, Thomas, Clokie, M. R. J., Loke, S., Millard, A., Parimannan, Sivachandran & Rajandas, Heera, 2021, In: Microbiology resource announcements. 10, 47, 3 p., e00965-21.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs
Rangel Piñeros, Guillermo Andres, Millard, A., Michniewski, S., Scanlan, D., Sirén, K., Reyes, A., Petersen, Bent, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: PHAGE: Therapy, Applications, and Research. 2, 4, p. 194-203Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos
Sinding, M. S., Ciucani, M. M., Ramos Madrigal, Jazmin, Carmagnini, A., Rasmussen, Jacob Agerbo, Feng, S., Chen, G., Vieira, Filipe Garrett, Mattiangeli, V., Ganjoo, R. K., Larson, G., Sicheritz-Pontén, Thomas, Petersen, Bent, Frantz, L., Gilbert, M Thomas P & Bradley, D. G., 2021, In: iScience. 24, 11, 18 p., 103226.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Rapid discovery of novel prophages using biological feature engineering and machine learning
Sirén, K., Millard, A., Petersen, Bent, Gilbert, M Thomas P, Clokie, M. R. J. & Sicheritz-Pontén, Thomas, 2021, In: NAR Genomics and Bioinformatics. 3, 1, 10 p., lqaa109.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences
Jorquera, R., Gonzalez, C., Clausen, P. T. L. C., Petersen, Bent & Holmes, D. S., 2021, In: Database: The Journal of Biological Databases and Curation. 2021, 5 p., baab002.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Tetragnatha kauaiensis Genome Sheds Light on the Origins of Genomic Novelty in Spiders
Cerca, J., Armstrong, E. E., Vizueta Moraga, Joel, Fernández, R., Dimitrov, D., Petersen, Bent, Prost, S., Rozas, J., Petrov, D. & Gillespie, R. G., 2021, In: Genome Biology and Evolution. 13, 12, 17 p., evab262.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
A draft genome sequence of the elusive giant squid, Architeuthis dux
da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, Â. M., Barrio-Hernandez, I., Hoving, H-J., Tafur-Jimenez, R., Chu, C., Frazão, B., Petersen, B., Peñaloza, F., Musacchia, F., Alexander, G. C. & 24 others, , 2020, In: GigaScience. 9, 1, 12 p., giz152.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Arctic-adapted dogs emerged at the Pleistocene-Holocene transition
Sinding, M. H. S., Gopalakrishnan, S., Ramos-Madrigal, J., de Manuel, M., Pitulko, V. V., Kuderna, L., Feuerborn, T. R., Frantz, L. A. F., Vieira, F. G., Niemann, J., Samaniego Castruita, J. A., Carøe, C., Andersen-Ranberg, E. U., Jordan, P. D., Pavlova, E. Y., Nikolskiy, P. A., Kasparov, A. K., Ivanova, V. V., Willerslev, E., Skoglund, P. & 15 others, , 2020, In: Science (New York, N.Y.). 368, 6498, p. 1495-1499 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Connecting moss lipid droplets to patchoulol biosynthesis
Peramuna, A., Bae, H., Quiñonero López, C., Fromberg, A., Petersen, Bent & Simonsen, H. T., 2020, In: PLoS ONE. 15, 12, 19 p., e0243620.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Dense sampling of bird diversity increases power of comparative genomics
Feng, S., Stiller, J., Deng, Y., Armstrong, J., Fang, Q., Hart Reeve, A., Xie, D., Chen, G., Guo, C., Faircloth, B. C., Petersen, B., Wang, Z., Zhou, Q., Diekhans, M., Chen, W., Andreu-Sánchez, S., Margaryan, A., Howard, J. T., Parent, C., Pacheco, G. & 130 others, , 2020, In: Nature. 587, 7833, p. 252-257Research output: Contribution to journal › Journal article › Research › peer-review
ID: 203154234
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Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
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394
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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
Research output: Contribution to journal › Letter › Research › peer-review
Published -
287
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The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics
Research output: Contribution to journal › Journal article › Research › peer-review
Published