Antton Alberdi Estibaritz
Associate Professor
Section for Hologenomics
Øster Farimagsgade 5
1353 København K
- Published
Plecotus macrobullaris (Chiroptera: Vespertilionidae)
Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2018, In: Mammalian Species. 50, 958, p. 26-33Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics
Eisenhofer Philipona, Raphael A, Nesme, J., Santos-Bay, Luisa, Koziol, Adam Leslie, Sørensen, Søren Johannes, Alberdi, Antton & Aizpurua Arrieta, Ostaizka, 2024, In: Microbiology Spectrum. 12, 4, 14 p., e03590-23.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A guide to the application of Hill numbers to DNA-based diversity analyses
Alberdi, Antton & Gilbert, M Thomas P, 2019, In: Molecular Ecology Resources. 19, 4, p. 804-817 14 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
Rice, E. S., Alberdi, A., Alfieri, J., Athrey, G., Balacco, J. R., Bardou, P., Blackmon, H., Charles, M., Cheng, H. H., Fedrigo, O., Fiddaman, S. R., Formenti, G., Frantz, L. A. F., Gilbert, M. T. P., Hearn, C. J., Jarvis, E. D., Klopp, C., Marcos, S., Mason, A. S., Velez-Irizarry, D. & 2 others, , 2023, In: BMC Biology. 21, 17 p., 267.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A simplified protocol for DNA extraction from FTA cards for faecal microbiome studies
Botnen, A. B., Bjørnsen, Mads Bjørn, Alberdi, Antton, Gilbert, M Thomas P & Aizpurua Arrieta, Ostaizka, 2023, In: Heliyon. 9, 1, 10 p., e12861.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A species-level trait dataset of bats in Europe and beyond
Froidevaux, J. S. P., Toshkova, N., Barbaro, L., Benítez-López, A., Kerbiriou, C., Le Viol, I., Pacifici, M., Santini, L., Stawski, C., Russo, D., Dekker, J., Alberdi, A., Amorim, F., Ancillotto, L., Barré, K., Bas, Y., Cantú-Salazar, L., Dechmann, D. K. N., Devaux, T., Eldegard, K. & 28 others, , 2023, In: Scientific Data. 10, 13 p., 253.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding
Aizpurua Arrieta, Ostaizka, Budinski, I., Georgiakakis, P., Gopalakrishnan, Shyam, Ibanez, C., Mata, V., Rebelo, H., Russo, D., Szodoray-Paradi, F., Zhelyazkova, V., Zrncic, V., Gilbert, M Thomas P & Alberdi, Antton, 2018, In: Molecular Ecology. 27, 3, p. 815-825 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An integrated framework to identify wildlife populations under threat from climate change
Razgour, O., Taggart, J. B., Manel, S., Juste, J., Ibanez, C., Rebelo, H., Alberdi, Antton, Jones, G. & Park, K., 2018, In: Molecular Ecology Resources. 18, 1, p. 18-31 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Applied Hologenomics: Feasibility and Potential in Aquaculture
Limborg, Morten Tønsberg, Alberdi, Antton, Kodama, M., Roggenbuck, M., Kristiansen, Karsten & Gilbert, M Thomas P, 2018, In: Trends in Biotechnology. 36, 3, p. 252-264 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessing niche partitioning of co-occurring sibling bat species by DNA metabarcoding
Arrizabalaga-Escudero, A., Clare, E. L., Salsamendi, E., Alberdi, Antton, Garin, I., Aihartza, J. & Goiti, U., 2018, In: Molecular Ecology. 27, 5, p. 1273-1283 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bacterial topography of the upper and lower respiratory tract in pigs
Pirolo, Mattia, Espinosa-Gongora, C., Alberdi, Antton, Eisenhofer Philipona, Raphael A, Soverini, M., Eriksen, E. Ø., Pedersen, Ken Steen & Guardabassi, Luca, 2023, In: BMC Animal Microbiome. 5, 13 p., 5.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Bat diversity boosts ecosystem services: Evidence from pine processionary moth predation
Augusto, A. M., Raposeira, H., Horta, P., Mata, V. A., Aizpurua Arrieta, Ostaizka, Alberdi, Antton, Jones, G., Razgour, O., Santos, S. A. P., Russo, D. & Rebelo, H., 2024, In: Science of the Total Environment. 912, 10 p., 169387.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Broad-scale patterns of geographic avoidance between species emerge in the absence of fine-scale mechanisms of coexistence
Novella-Fernandez, R., Juste, J., Ibáñez, C., Rebelo, H., Russo, D., Alberdi, Antton, Kiefer, A., Graham, L., Paul, H., Doncaster, C. P. & Razgour, O., 2021, In: Diversity and Distributions. 27, 9, p. 1606-1618 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
Can pinewoods provide habitat for a deciduous forest specialist? a two-scale approach to the habitat selection of Bechstein's bat
Arrizabalaga-Escudero, A., Napal, M., Aihartza, J., Garin, I., Alberdi, Antton & Salsamendi, E., 2014, In: Mammalian Biology. 79, 2, p. 117-122 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Comparative Microbiome Analysis Reveals the Ecological Relationships Between Rumen Methanogens, Acetogens, and Their Hosts
Li, Z., Wang, X., Alberdi, Antton, Deng, J., Zhong, Z., Si, H., Zheng, C., Zhou, H., Wang, J., Yang, Y., Wright, A. D. G., Mao, S., Zhang, Z., Guan, L. & Li, G., 2020, In: Frontiers in Microbiology. 11, 14 p., 1311.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Considering adaptive genetic variation in climate change vulnerability assessment reduces species range loss projections
Razgour, O., Forester, B., Taggart, J. B., Bekaert, M., Juste, J., Ibáñez, C., Puechmaille, S. J., Novella-Fernandez, R., Alberdi, Antton & Manel, S., 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 21, p. 10418-10423 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats
Alberdi, Antton, Razgour, O., Aizpurua Arrieta, Ostaizka, Novella-Fernandez, R., Aihartza, J., Budinski, I., Garin, I., Ibanez, C., Izagirre, E., Rebelo, H., Russo, D., Vlaschenko, A., Zhelyazkova, V., Zrncic, V. & Gilbert, M Thomas P, 2020, In: Nature Communications. 11, 8 p., 1154.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
DNA metabarcoding reveals seasonal changes in diet composition across four arthropod-eating lizard species (Phrynosomatidae: Sceloporus)
Hernández, M., Hereira-Pacheco, S., Alberdi, Antton, De La Vega-Pérez, A. H. D., Estrada-Torres, A., Ancona, S. & Navarro-Noya, Y. E., 2024, In: Integrative Zoology. 19, 3, p. 480-495 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Diversity and compositional changes in the gut microbiota of wild and captive vertebrates: a meta-analysis
Alberdi, Antton, Martin Bideguren, Garazi & Aizpurua Arrieta, Ostaizka, 2021, In: Scientific Reports. 11, 10 p., 22660.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Do vertebrate gut metagenomes confer rapid ecological adaptation?
Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Zepeda Mendoza, M. L. & Gilbert, M Thomas P, Sep 2016, In: Trends in Ecology & Evolution. 31, 9, p. 689-699 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Ecology and evolutionary biology of fishing bats
Aizpurua Arrieta, Ostaizka & Alberdi, Antton, 2018, In: Mammal Review. 48, 4, p. 284-297Research output: Contribution to journal › Review › Research › peer-review
- Published
Enriching captivity conditions with natural elements does not prevent the loss of wild-like gut microbiota but shapes its compositional variation in two small mammals
Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Jessen, Lasse Nyholm, Leonard, Aoife Mary, San Jose, C., Pauperio, J., Ferreira, C., Hansen, Anders Johannes, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Alberdi, Antton, 2022, In: MicrobiologyOpen. 11, 5, 19 p., e1318.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Field and laboratory guidelines for reliable bioinformatic and statistical analysis of bacterial shotgun metagenomic data
Aizpurua Arrieta, Ostaizka, Dunn, Rob, Hansen, Lars Hestbjerg, Gilbert, M Thomas P & Alberdi, Antton, 2024, (E-pub ahead of print) In: Critical Reviews in Biotechnology.Research output: Contribution to journal › Review › Research › peer-review
- Published
Fine-tuned echolocation and capture-flight of Myotis capaccinii when facing different-sized insect and fish prey
Aizpurua, O., Aihartza, J., Alberdi, Antton, Baagøe, Hans J. & Garin, I., 2014, In: Journal of Experimental Biology. 217, 18, p. 3318-3325 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
First records of the parti-coloured bat Vespertilio murinus (Chiroptera: Vespertilionidae) in the Pyrenees
Alberdi, Antton, Aihartza, J., Albero, J. C., Aizpurua, O., López-Baucells, A., Freixas, L., Puig, X., Flaquer, C. & Garin, I., 2012, In: Mammalia. 76, 1, p. 109-111 3 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Fishing technique of long-fingered bats was developed from a primary reaction to disappearing target stimuli
Aizpurua, O., Alberdi, Antton, Aihartza, J. & Garin, I., 2016, In: P L o S One. 11, 12, 12 p., e0167164.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gut microbiota differences between paired intestinal wall and digesta samples in three small species of fish
Jessen, Lasse Nyholm, Larrañaga, Iñaki Odriozola, Martin Bideguren, Garazi, Aizpurua Arrieta, Ostaizka & Alberdi, Antton, 2022, In: PeerJ. 10, 22 p., e12992.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research
Jessen, Lasse Nyholm, Koziol, Adam Leslie, Marcos, S., Botnen, A. B., Aizpurua Arrieta, Ostaizka, Gopalakrishnan, Shyam, Limborg, Morten Tønsberg, Gilbert, M Thomas P & Alberdi, Antton, 2020, In: iScience. 23, 8, p. 1-16 101414.Research output: Contribution to journal › Review › Research › peer-review
- Published
Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin
Hooper, R., Brealey, J. C., van der Valk, T., Alberdi, Antton, Durban, J. W., Fearnbach, H., Robertson, K. M., Baird, R. W., Bradley Hanson, M., Wade, P., Gilbert, M Thomas P, Morin, P. A., Wolf, J. B. W., Foote, A. D. & Guschanski, K., 2019, In: Molecular Ecology. 28, 2, p. 484-502 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of microbial genome completeness on metagenomic functional inference
Eisenhofer Philipona, Raphael A, Larrañaga, Iñaki Odriozola & Alberdi, Antton, 2023, In: ISME communications. 3, 5 p., 12.Research output: Contribution to journal › Journal article › Research › peer-review
Insight on how fishing bats discern prey and adjust their mechanic and sensorial features during the attack sequence
Aizpurua, O., Alberdi, Antton, Aihartza, J. & Garin, I., 2015, In: Scientific Reports. 5, 8 p., 12392.Research output: Contribution to journal › Journal article › Research › peer-review
Living above the treeline: roosting ecology of the alpine bat Plecotus macrobullaris
Alberdi, Antton, Aihartza, J., Aizpurua, O., Salsamendi, E., Brigham, R. M. & Garin, I., 2015, In: European Journal of Wildlife Research. 61, 1, p. 17-25 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mammals show distinct functional gut microbiome dynamics to identical series of environmental stressors
Koziol, Adam Leslie, Larrañaga, Iñaki Odriozola, Leonard, Aoife Mary, Eisenhofer Philipona, Raphael A, José, C. S., Aizpurua Arrieta, Ostaizka & Alberdi, Antton, 2023, In: mBio. 14, 5, 17 p., e01606-23.Research output: Contribution to journal › Journal article › Research › peer-review
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Novel strategies to improve chicken performance and welfare by unveiling host-microbiota interactions through hologenomics
Tous, N., Marcos, S., Goodarzi Boroojeni, F., Pérez de Rozas, A., Zentek, J., Estonba, A., Sandvang, D., Gilbert, M Thomas P, Esteve-Garcia, E., Finn, R., Alberdi, Antton & Tarradas, J., 2022, In: Frontiers in Physiology. 13, 14 p., 884925.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Promises and pitfalls of using high-throughput sequencing for diet analysis
Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Bohmann, Kristine, Gopalakrishnan, Shyam, Lynggaard, Christina Islas, Nielsen, M. & Gilbert, M Thomas P, Mar 2019, In: Molecular Ecology Resources. 19, 2, p. 327-348Research output: Contribution to journal › Review › Research › peer-review
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Recovering High-Quality Host Genomes from Gut Metagenomic Data through Genotype Imputation
Marcos, S., Parejo, M., Estonba, A. & Alberdi, Antton, 2022, In: Advanced Genetics. 3, 3, 14 p., 2100065.Research output: Contribution to journal › Journal article › Research › peer-review
Review on the geographic and elevational distribution of the mountain long-eared bat Plecotus macrobullaris, completed by utilising a specific mist-netting technique
Alberdi, Antton, Garin, I., Aizpurua Arrieta, Ostaizka & Aihartza, J., 2013, In: Acta Chiropterologica. 15, 2, p. 451-461 11 p.Research output: Contribution to journal › Review › Research › peer-review
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Scrutinizing key steps for reliable metabarcoding of environmental samples
Alberdi, Antton, Aizpurua Arrieta, Ostaizka, Gilbert, M Thomas P & Bohmann, Kristine, 2018, In: Methods in Ecology and Evolution. 9, 1, p. 134-147 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Contribution of Desert-Dwelling Bats to Pest Control in Hyper-Arid Date Agriculture
Schackermann, J., Morris, E. J. J., Alberdi, Antton, Razgour, O. & Korine, C., 2022, In: Diversity. 14, 12, 14 p., 1034.Research output: Contribution to journal › Journal article › Research › peer-review
The Foraging Ecology of the Mountain Long-Eared Bat Plecotus macrobullaris Revealed with DNA Mini-Barcodes
Alberdi, Antton, Garin, I., Aizpurua, O. & Aihartza, J., 2012, In: PLoS ONE. 7, 4, 10 p., e35692.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The gut microbiome buffers dietary adaptation in Bronze Age domesticated dogs
Rampelli, S., Turroni, S., Debandi, F., Alberdi, Antton, Schnorr, S. L., Hofman, C. A., Taddia, A., Helg, R., Biagi, E., Brigidi, P., D'Amico, F., Cattani, M. & Candela, M., 2021, In: iScience. 24, 8, 20 p., 102816.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The long-term restoration of ecosystem complexity
Moreno-Mateos, D., Alberdi, Antton, Morrien, E., van der Putten, W. H., Rodriguez-Una, A. & Montoya, D., May 2020, In: Nature Ecology & Evolution. 4, 5, p. 676-685 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa
Hervella, M., Svensson, E. M., Alberdi, Antton, Günther, T., Izagirre, N., Munters, A. R., Alonso, S., Ioana, M., Ridiche, F., Soficaru, A., Jakobsson, M., Netea, M. G. & de-la-Rua, C., 19 May 2016, In: Scientific Reports. 6, 5 p., 25501.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of the gut microbiota in the dietary niche expansion of fishing bats
Aizpurua Arrieta, Ostaizka, Jessen, Lasse Nyholm, Morris, E., Chaverri, G., Montalvo, L. G. H., Flores-Martinez, J. J., Lin, A., Razgour, O., Gilbert, M Thomas P & Alberdi, Antton, 2021, In: BMC Animal Microbiome. 3, 14 p., 76.Research output: Contribution to journal › Journal article › Research › peer-review
Trophic requirements beyond foraging habitats: the importance of prey source habitats in bat conservation
Arrizabalaga-Escudero, A., Garin, I., García-Mudarra, J. L., Alberdi, Antton, Aihartza, J. & Goiti, U., 2015, In: Biological Conservation. 191, p. 512-519 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unveiling the factors shaping the distribution of widely distributed alpine vertebrates, using multi-scale ecological niche modelling of the bat Plecotus macrobullaris
Alberdi, Antton, Aizpurua, O., Aihartza, J. & Garin, I., 2014, In: Frontiers in Zoology. 11, 13 p., 77.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unveiling the hidden bat diversity of a Neotropical montane forest
Chaverri, G., Garin, I., Alberdi, Antton, Jimenez, L., Castillo-Salazar, C. & Aihartza, J., 5 Oct 2016, In: P L o S One. 11, 10, 19 p., e0162712.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 152300361
Most downloads
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352
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Applied Hologenomics: Feasibility and Potential in Aquaculture
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
205
downloads
The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
167
downloads
An integrated framework to identify wildlife populations under threat from climate change
Research output: Contribution to journal › Journal article › Research › peer-review
Published